Therefore, do not put MATLAB in an NTFS partition of an external HD perhaps creating a Linux partition in the external HD just for Linux-specific stuff could work for this matter, but how much hassle is that? 1.2.
MATLAB R2013A SUPPORT INSTALL
Make your life easierĮven though it seems like a good idea to install a big software in a place where you have lots of available space and that you can use in multiple machines (specially in Linux, which doesn't have that abomination called Registry, and has symbolic links), that would only perhaps be a good idea - apart from item 1.1.1 - if that place is a partition with a Linux filesystem, since at some point, some executable/script will need execution permission, and mounting the entire partition with execution permission for all its files is rather unsafe.
MATLAB R2013A SUPPORT HOW TO
It is very likely you will want to install some other software that uses the MATLAB framework at some point, and in the real world software doesn't always find other software even if you know how to tell it where to look for. Install it in its default location (you will need root access for this), don't be stubborn like I tried to be. I hope I am not forgetting/missing/mistaking anything. This is how I got it working and what I could learn from all the hassle regarding how my Linux box works. What needs to be done to make COBRA 2.05 running on top of MATLAB R2013a under Linux (Ubuntu 14.04 or the latest Mint, but this is not likely distro-specific) able to read and write SBML XML files? In other words, what needs to be done system-wide to make COBRA pass its own testSBML test? If one tries to use the pre-compiled libSBML, COBRA won't find the "MATLAB bindings" and therefore won't be able to, for example, read and write SBML XML files from the disk in a m-script. Unlike the Windows versions, the Linux binary packages do not integrate well out-of-the-box: to begin with, the pre-compiled Linux binary of libSBML (open-source) available for download does not come with MATLAB support. Therefore, routines to read and write those large models according to some format specification are a must-have, and COBRA uses the standard SBML for that.
Such a "network" is a system of equations that can have a very large number of equations and variables (such as thousands). The COBRA toolbox is an optimization suite that runs on top of MATLAB aimed at the development of MATLAB code for metabolic network modelling. MATLAB R2013a (Also known as 8.1, 64-bit MATLAB no longer supports 32-bit Linux anyway)Ī 64-bit Linux OS (such as Ubuntu 14.04 or the latest Mint but not restricted to them)
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